sokrypton / ColabFold

Making Protein folding accessible to all!
MIT License
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fasta file not processed by colabfold_batch when using local mmseq2 server #289

Closed pannoniac closed 2 years ago

pannoniac commented 2 years ago

Assumption: Databases not indexed correctly or naming mismatch. Input /apps/prod/COMPCHEM/colabfold/git/ColabFold/MsaServer/databases/uniref30_2103 does not exist -> ? Input /apps/prod/COMPCHEM/colabfold/git/ColabFold/MsaServer/databases/uniref30_2103.idx does not exist -> a file called "uniref30_2103_db.idx" exists

Expected Behavior

fasta input file processed by colabfold with locally installed msa server

Current Behavior

fasta input file not processed. Error: raise Exception(f'MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.') Exception: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.

Steps to Reproduce (for bugs)

If running locally ypdate you local installation colabfold_batch to the newest version. Please provide your input if you can share it. Follow instructions from git:

Your Environment

Include as many relevant details about the environment you experienced the bug in.

pannoniac commented 2 years ago

In the meantime colabfold_batch works fine with a locally hosted msa-server. From my perspective this issue can be closed. Thank you.