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sokrypton / ColabFold

Making Protein folding accessible to all!
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Out of memory #32

Open 893932098 opened 3 years ago

893932098 commented 3 years ago

When I submitted a long sequence, I met the 'out of memory' error.

sokrypton commented 3 years ago

How long is this sequence?

893932098 commented 3 years ago

just like these

>tr|Q7Z8L7|Q7Z8L7_EMEND Histone deacetylase OS=Emericella nidulans OX=162425 GN=hdaa PE=3 SV=1 MVDDEDIIMGEAGYHSANPNTAIAAGQQTTHGHLNGRSDPYLAPPLLSQPMQMPVVQAGN SQTQESSATTDEARVLSPKIDLNSTVPADAADITPDYQDSLVDEYSDYAEESKEAPGLPL ASLPSGLCYDVQMRYHCEVRPTSDVHPEDPRRIYYIYKELCRAGLVDDIESTRPLVARPL KRIHARNATEEEISLVHTAAHYAFVESTKDMSDEELIALEHTRDSIYFNNLTFASSLLSV GGAIETCLAVATRKVKNAIAVIRPPGHHAEHDKTMGFCLFNNVSVAARVCQQRLGLSCRK IMILDWDVHHGNGIQKAFYDDPNVLYISLHVYQNGSFYPGEKDGDADFCGAGAGEGKNVN IPWPSQGMGDGDYIYAFHQVVMPIAQEFDPDLVIIASGFDAAAGDTLGGCFVTPACYAHM THMLMTLAQGKVAVCLEGGYNFRSISKSALAVTKTLMGNPPDRLSFTCPSEAAISTIRRV SSIQSDYWKCMYPKAIKNEGVWTDRLHDIIRAYQAKQLYDNYKLTSLYIYRTAISKSFEN QVLASPNYNQATPLIVIFHDPPEIMGLPHPLTNNLEAHNCWLADVMKDYVQWAVGKGYAV IDVNIPKHVTTEPSSGRFEEEDENRPTATEELAGYLWDNYIDPNEATEIFLVGIGNAFYG VANLLINRETLYQRVNGVISFVAKDPVRAVASHTQVWLSRWYRDNSLVFVSKAHGVWKSD RKATKRYGKLIQSSREGLSDMLMHHKDEVFQWIEDRIEPESEETEEEKPVKRSPTKAAPK AA

>jgi|Phyca11|564296|estExt2_Genewise1.C_PHYCAscaffold_140348 P. capsici MQALQDAQQRFNDLVNNDWPERVPVESMPDYDPTYMKEGFLQKKGQRLKGWKRRWFVCDGRTLSYYISRKDRKPNAVIPL EGCTVQDGGLSETWNSPRIYLTDPATGIMYCLSAEEGIVVTQWLDVLRVAVARVNNGTAATDSSAAPSSQSSSHNRTRQQ ARTQAQRLPSSSDDEDSRAHLKRAASLGPSQARTTTLKSASSAVVSSSAGNSTSNGDGKRSTRMTSAPSAVTTSNSNSQH TQHHRVHRTKTQRLPTTISLENELSHGLDVLEALLCGYSATRSSSSLRNHVVFRPIGAVNGVLRSIGTDSSSGKQYARAS VVLPVSSEVAAILLADHARRAEWDVHFPQSAHVATFDDATDLVHLSSGSFAQIQQTKPIVAPHVAAAACALCAALFSGAS SWEALLTAMIYAAAVGGIVSSIDYSTLTAPRDLVVLRHVRESATPDSQDSSDDKSADEMGQSVVLILEKSVVNELKPVVS GIVRAHVGLSGWLLEPVDSGHATLATYITDLDMKGWLAPTTRQSFLLSRLDCVSVLSEYVNQAHLCGSELGFGGGLDEDG EGEFETRSVGYDDTSEASGLGDVVDGESSSIFHPKTYMRGMMPLPSGGLKLIDKEIAKKQGGVVKDVIKSAGAKILEGKS AVSLSLPVRIFEPRTNLERVCDLMLYAPTFLNVAYAQNDALERFKYVVTFAVAGLHHSIGQLKPFNPILGETFQSTLNDG TDVSCEHTSHHPPISNFQFTGEKYSIAGFVLWHASMSVKSNAMLNTNKGPVRVTFPDADGLPGTTIEYNLPYLQIGGLLW GDRTVDIMGNMVFEDKKNRLQCELRLNPDAKSGMGGMFSSSKTPTDSLRGVILDTSVSPPREICDVSGSWLHDLVFGNKT YWSINKYQSGYMVPFPEDKILASDSRHREDLHYLAAGDLDESQEWKVKLEVLQRADRKARLDGRRPNHWSFRSSAGH

------------------ 原始邮件 ------------------ 发件人: "sokrypton/ColabFold" @.>; 发送时间: 2021年8月28日(星期六) 凌晨0:04 @.>; @.**@.>; 主题: Re: [sokrypton/ColabFold] Out of memory (#32)

How long is this sequence?

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