Closed shahpnmlab closed 8 months ago
One can "just" build a singularity container based on the work done by Yoshitaka Moriwaki and alphafold dockerfile, imho.
Old topic but if you are interested @truatpasteurdotfr and @shahpnmlab, I just made one based on the AF2 docker image and the work one by Yoshitaka Moriwaki (https://github.com/YoshitakaMo/localcolabfold) The usage is quite specific to our cluster for now but you change modify it / improve it and share it if you want. here's the link: https://github.com/tubiana/colabfold_singularity
Best, Thibault.
We finally have actual Docker images on the GitHub container registry that we are going to keep maintaining from now on: https://github.com/sokrypton/ColabFold/pkgs/container/colabfold
I don't know about singularity. If you have some instructions on how we can provide singularity containers. I'd be happy to look into.
Thanks! Will check with our sysadmins, if this plays nice with their sec policies.
I also just tried the Docker container together with singularity and it seems to work fine. I updated the guide above. I am not making a separate Singularity container for now as the Docker container seems to work well with Singularity.
Hi,
I was wondering if the project could be integrated into a singularity installation of AlphaFold2. If yes, how would one go about achieving it?
Best, Pranav