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sokrypton / ColabFold

Making Protein folding accessible to all!
MIT License
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evoformer embeddings #586

Open adrienchaton opened 7 months ago

adrienchaton commented 7 months ago

Hi @sokrypton and thanks for another great project,

No "issue" here, rather a question since I couldn't find it in this repo or the colabdesign one ... Is there a way to get the residue embeddings that are computed by the evoformer within the structure prediction model please?

Whether the input is a single sequence or an MSA, my understanding is that some residue embeddings are computed for the query sequence, which are then used as node features for the folding model.

I haven't found anything about how to compute these, although it could be super useful as a representation.

Thanks!

dcbiton commented 2 months ago

Hi I also would like to ask if this was resolved? How to get the evoformer embeddings. thank you so much.