trying to save compute time by using previous prediction to model next prediction (e.g. now using Amber or making mutation)

hope to use previous rank1 output pdf file (renamed equivalent to abcd.pdb) as Custom Template

Current Behavior

Steps to Reproduce (for bugs)

Please make sure to reproduce the issue after a "Factory Reset" in Colab.

Could not find this in the Runtime dropdown menu. Instead I did "Disconnect and delete Runtime". Issue unchanged.

If running locally ypdate you local installation colabfold_batch to the newest version. Please provide your input if you can share it.

ColabFold Output (for bugs)

wtct.pdb(chemical/x-pdb) - 208575 bytes, last modified: n/a - 0% done

MessageError Traceback (most recent call last) in <cell line: 51>() 55 custom_template_path = os.path.join(jobname,f"template") 56 os.makedirs(custom_template_path, exist_ok=True) ---> 57 uploaded = files.upload() 58 use_templates = True 59 for fn in uploaded.keys():

3 frames /usr/local/lib/python3.10/dist-packages/google/colab/_message.py in read_reply_from_input(message_id, timeout_sec) 101 ): 102 if 'error' in reply: --> 103 raise MessageError(reply['error']) 104 return reply.get('data', None) 105

MessageError: RangeError: Maximum call stack size exceeded.

Context

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Running T4 GPU session.

Your Environment

Include as many relevant details about the environment you experienced the bug in.

Git commit used : ???
Operating system and version: Mac Ventura using Safari

I tried to attach the pdf file in question but it is not an allowed file type - so I added a further ".txt" suffix wtct.pdb.txt

sokrypton / ColabFold