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solgenomics / breedbase_dockerfile

The Dockerfiles for breeDBase
MIT License
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PERL5LIB path missing for ontology scripts #4

Closed nickpalladino closed 5 years ago

nickpalladino commented 5 years ago

When trying to run gmod_load_cvterms.pl from https://github.com/TriticeaeToolbox/ontology-scripts on the breedbase docker image, perl gives an error message saying that it can't find Bio::GMOD::Config. The Config.pm file is in the filesystem at /home/production/cxgn/Chado/chado/lib but that path is missing from the PERL5LIB environmental variable. I plan to submit a pull request adding that path to the docker file PERL5LIB definition.

nickpalladino commented 5 years ago

Just saw that this was added yesterday, should be all set. Thanks.