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som-shahlab / ehr_ml

Code for doing machine learning with various EHRs
MIT License
21 stars 3 forks source link

Minor hiccup during installation #11

Closed guolin1 closed 3 years ago

guolin1 commented 3 years ago

I got the error Could not build wheels for ehr-ml which use PEP 517 and cannot be installed directly after following the installation guide in the documentation:

conda create -n env_name python=3.9 bazel gxx_linux-64 -c conda-forge conda activate env_name pip install git+https://github.com/som-shahlab/ehr_ml.git

This seems to have been caused by an outdated CMAKE version, and was fixed by upgrading CMAKE via pip install cmake --upgrade prior to running the installation. I wonder if it's worth updating the documentation in case others run into similar issues.

EthanSteinberg commented 3 years ago

Thanks for the feedback. I think the solution here is to fix the docs such that we install cmake within conda. Thanks for the report!