Create a Singulary container build of CLMBR

som-shahlab / ehr_ml

Code for doing machine learning with various EHRs

MIT License

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Create a Singulary container build of CLMBR #2

Open jason-fries opened 3 years ago

jason-fries commented 3 years ago

Due to the specific system dependencies of CLMBR, can we build a singular container for training models? This will make it much easier to deploy internally as well as share with collaborators.

EthanSteinberg commented 3 years ago

The solution here is to create a compiled pypi package. I'll leave this issue open though to track that though.

EthanSteinberg commented 3 years ago

This is now fixed as the install process has been cleaned up.

jason-fries commented 3 years ago

This is an orthogonal issue to simplifying the installation process. A user might not be able, for security or admin reasons, to install the required packages needed to build clmbr. A containerized distribution is useful in these settings and many others. Let’s leave this open as a todo.