Germline variant call - Githubissues

songbowang125 / SVision-pro

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Germline variant call #9

Closed jjuhyunkim closed 2 months ago

jjuhyunkim commented 2 months ago

Hi!

Can I use the file ${prefix}.svision_pro_v1.8.s5.vcf.gz for downstream analysis of both somatic and germline variants? I've used --detect_mode somatic

Thanks!

songbowang125 commented 2 months ago

Of course you can use the VCF from '--detect_mode somatic' for both somatic and germline analysis since the VCF contains all SVs in your 'target file'.

jjuhyunkim commented 2 months ago

Thank you for clarifying! :)