Question about feature of amino acid descriptors

songlab-cal / CPT

Cross-protein transfer learning for variant effect prediction

BSD 3-Clause "New" or "Revised" License

17 stars 2 forks source link

Question about feature of amino acid descriptors #2

Closed yang-arina closed 6 months ago

yang-arina commented 6 months ago

Hi! I'm going through the feature of amino acid descriptors, and I wonder where does this kind of feature come from? It seems that I have not found relevant information in the article and on the Zenodo website. KF1,KF2,KF3,KF4,KF5,KF6,KF7,KF8,KF9,KF10: If you could reply as soon as possible, I would be extremely grateful！

mjag1898 commented 6 months ago

Amino acid descriptor features are sourced from main text references 49-55. For the specific features that were used in the final model, see supplement references 11-13.

This Github associated with main text reference 49 provides the tables: https://github.com/dosorio/Peptides

yang-arina commented 6 months ago

Thank you for your reply! I have identified and understood the sources of all features except for KF1,KF2,KF3,KF4,KF5,KF6,KF7,KF8,KF9,KF10, I am unsure are they the kideraFactors mentioned in https://github.com/dosorio/Peptides?