songlab-cal gpn issues - Githubissues

songlab-cal / gpn

Genomic Pre-trained Network

https://doi.org/10.1073/pnas.2311219120

MIT License

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VEP.ipynb scoring

#30 Anshullllllll closed 1 week ago
1
GPN-SS pre-train process

#29 Ssupercoder closed 1 month ago
1
Develop a VEP for non-human organisms

#28 biojiangke closed 3 months ago
1
'str' object has no attribute 'id'

#27 agryji08 opened 3 months ago
0
Calculation of AUPRC in GPN-MSA Figure 2b

#26 yangzhao1230 closed 5 months ago
4
the Increased Number of Entries in the Updated VEP Dataset on Hugging Face

#25 yangzhao1230 closed 6 months ago
1
Loss weighting behavior will give inconsistent "upweighting" between batches

#23 yair-schiff closed 6 months ago
3
Cannot run vep.ipynb (variant effect prediction)

#22 raphaelmourad closed 7 months ago
2
Why Bidirectional LLR Calculation and Averaging

#21 yangzhao1230 closed 7 months ago
1
Discrepancy in ClinVar Pathogenic Variant Counts: Paper vs. Hugging Face Dataset

#20 yangzhao1230 closed 7 months ago
2
fstring syntax error for python 3.7.13

#19 russellkune opened 7 months ago
0
IndexError: tuple index out of range

#16 dahaigui closed 9 months ago
12
Tokenizer for gpn-msa-sapiens

#15 IandRover closed 9 months ago
1
How can I specify the GPU to run the program?

#13 dahaigui closed 9 months ago
2
ConnectionError: Couldn't reach 'results/dataset' on the Hub (ConnectionError)

#12 dahaigui closed 9 months ago
2
Help with alternative set up

#11 Michal-Babins closed 1 year ago
11
Variant effect prediction analysis

#10 smruti241 closed 1 year ago
1
GPN for covid genome

#9 smruti241 closed 1 year ago
1
How to generate the missing output files

#8 wokkel closed 1 year ago
3
Data used for computing perplexity

#7 liuyq123 closed 1 year ago
4
Benefits of using S4D?

#6 aga-relation closed 1 year ago
1
Question about Model

#5 gdolsten closed 1 year ago
11
Do you have pre-trained GPN for different genomes?

#4 gdolsten closed 1 year ago
8
Use multiple GPUs for training

#3 liuyq123 closed 1 year ago
6
ignore_data_skip error

#2 liuyq123 closed 1 year ago
2
Get error when downloading vep data

#1 liuyq123 closed 1 year ago
5