songlab-cal tape-neurips2019 issues

songlab-cal / tape-neurips2019

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)

https://arxiv.org/abs/1906.08230

MIT License

118 stars 34 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Update data and model paths to new s3 bucket

#24 thomas-a-neil closed 3 years ago
0
Evaluation on contact prediction with binary metrics

#23 nbuton opened 3 years ago
0
Freeze Weights

#22 spark157 opened 4 years ago
1
About Bepler's baseline performance

#21 DaHaiHuha opened 4 years ago
0
How Bepler's Multitask Model trained

#20 DaHaiHuha opened 4 years ago
0
Fix bug in to_uniprot_bepler function

#19 DaHaiHuha closed 4 years ago
5
how to debug in pycharm using this project

#18 fishguysword closed 4 years ago
2
ImportError: libcublas.so.9.0: cannot open shared object file

#17 Kevin-chen-sheng closed 4 years ago
1
amino acid mapping

#16 madani-sf closed 4 years ago
2
Fix output directory

#15 mlgill closed 4 years ago
1
Error when training is done

#14 wxx07 opened 4 years ago
7
[data] update download data script

#13 tijyojwad closed 4 years ago
1
Embedding tfrecords doesn't work

#12 goaaron closed 5 years ago
4
Example on how to add a new Task

#11 proto-tardigrade opened 5 years ago
3
Use h5py for output data writing and consolidation to reduce memory footprint

#10 thomas-a-neil closed 4 years ago
4
Citation for NetSurfP2.0

#9 yangkky closed 5 years ago
2
Eval error: CUDA_ERROR_OUT_OF_MEMORY

#8 spark157 opened 5 years ago
6
Global Arguments question

#7 spark157 closed 5 years ago
1
Pretrained supervised task-specific weights for fluorescence task?

#6 spark157 opened 5 years ago
6
Add tool for embedding input fasta

#5 thomas-a-neil closed 5 years ago
0
Adding models to the benchmark

#4 bl-2633 closed 5 years ago
5
Rename and deploy to PyPI

#3 cthoyt opened 5 years ago
2
Use entrypoints for main function and run scripts

#2 cthoyt closed 5 years ago
2
Use entrypoints for CLI

#1 cthoyt closed 5 years ago
0