Hi,
I used MEGENA for identifying modules in my network (gene co-expression network). Now my question is, how could I find edges in each modules?! Because MEGENA only gives nodes within each module not relative edges?! I want to plot modules so that I need nodes and links.
Another question is how did you plot fig4 of the MEGENA paper (doi:10.1371/journal.pcbi.1004574), I guess that you might use Cytoscape? But it is not mentioned in material an method. I also want to plot a network like fig 4 in your paper.
Best,
Tima
Hi, I used MEGENA for identifying modules in my network (gene co-expression network). Now my question is, how could I find edges in each modules?! Because MEGENA only gives nodes within each module not relative edges?! I want to plot modules so that I need nodes and links. Another question is how did you plot fig4 of the MEGENA paper (doi:10.1371/journal.pcbi.1004574), I guess that you might use Cytoscape? But it is not mentioned in material an method. I also want to plot a network like fig 4 in your paper. Best, Tima