songw01 / MEGENA

Multiscale embedded gene co-expression network analysis
GNU General Public License v3.0
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Missing edges #26

Open Snehal1894 opened 3 weeks ago

Snehal1894 commented 3 weeks ago

Hello I am trying to run MEGENA on my dataset of ~3000 genes and while plotting the hierarchy I get following issue.

Screenshot from 2024-08-16 15-03-10

So I tried running the steps on 100 genes , and this how the module table looks, (from this table looks like the network is missing connection information for node c1_2) Screenshot from 2024-08-16 15-02-55

Any suggestions on what could be cause of this bug ? any help would be appreciated. Thank you.