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songweizhi / MarkerMAG

Linking MAGs with 16S rRNA marker genes
GNU Affero General Public License v3.0
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Cannot provide usearch executable path to MarkerMAG link #8

Closed CJREID closed 2 months ago

CJREID commented 2 months ago

Hi there,

I'm trying to run MarkerMAG link but I get the error usearch not found, program exited!. I have tried adding the executable to my path and assigning it to a variable usearch.

I see other functions in MarkerMAG have a -usearch option to specify the location of the executable but not the link function.

How do I let MarkerMAG link know where my usearch executable is?

Thanks,

Cam