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songweizhi
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MetaCHIP
Horizontal gene transfer (HGT) identification pipeline
GNU Affero General Public License v3.0
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No input genome detected, program exited! using costumized grouping
#50
jesusbvf
opened
1 year ago
0
Number of input file for metagenomic studies. ERROR: MetaCHIP working directory detected, program exited!
#49
bahiyahazli
closed
1 year ago
2
Installation issues
#48
pancrystal
closed
1 year ago
2
The dependencies of MetaCHIP could't be detected
#47
ZQYYRA
closed
1 year ago
0
NA direction
#46
schmittel
closed
1 year ago
1
Command line argument error: Argument "subject". File is not accessible
#45
B-1991-ing
opened
1 year ago
2
Biopython need to be >= 1.78, MetaCHIP exited!
#44
B-1991-ing
closed
1 year ago
5
MetaCHIP working directory detected, program exited!
#43
XipengLiu
closed
1 year ago
0
plots issues
#42
aslangabriel
opened
1 year ago
0
Plots still produced in v1.10.12
#41
susheelbhanu
closed
1 year ago
1
Too many files produced
#40
susheelbhanu
closed
1 year ago
2
All files in strain_pcofg_blastn_results are empty, program exited
#39
weiting-liang
closed
1 year ago
3
No alias or index file found for nucleotide database
#38
schmittel
closed
1 year ago
1
Is there a way to suppress generation of flanking region plots?
#37
polinanvkv
closed
2 years ago
1
Issue when parsing the Ranger-DTL2 output, no circos created
#36
polinanvkv
opened
2 years ago
1
Unexplainable behaviour of MetaCHIP PI
#35
polinanvkv
closed
1 year ago
1
conda install -c bioconda metachip
#34
fconstancias
opened
2 years ago
1
About the interpretation of the results
#33
maocheng2020
opened
2 years ago
2
IndexError: list index out of range when MetaCHIP=1.10.9 & biopython=1.79
#32
yuqingyi33
closed
1 year ago
3
gene transfers of the same class
#31
maocheng2020
closed
2 years ago
0
identity percentile cutoff
#30
ntromas
closed
2 years ago
0
Error in PI step: Invalid index
#29
linshutian02
opened
2 years ago
1
Recommendation on use of tools such as RefineM, GUNC or MAGpurify before HGT detection?
#28
Jigyasa3
opened
2 years ago
0
Error in PI step with Prodigal
#27
ddf37
closed
2 years ago
3
Index out of range
#26
susheelbhanu
closed
2 years ago
10
blastn issue
#25
ntromas
closed
2 years ago
1
fixed FileNotFoundError for issue #23
#24
nick-youngblut
closed
2 years ago
2
FileNotFoundError
#23
nick-youngblut
closed
2 years ago
15
Singularity use
#22
Lcornet
closed
3 years ago
1
Problem Running BP
#21
nevermind1996
closed
2 years ago
1
linclust as alternative to all-vs-all blastn
#20
nick-youngblut
closed
1 year ago
2
Error in PI step
#19
BJCampbelllab
closed
3 years ago
4
Rooting the phylogeentic tree
#18
473021677
closed
3 years ago
0
Find HGT between genes of different genomes
#17
ga23981
opened
3 years ago
6
what is blastdb/*.fasta ?
#16
mmpust
closed
3 years ago
4
Question about average group identity
#15
arsuke
closed
3 years ago
1
Bio.Alphabet has been removed from Biopython
#14
SophieS9
closed
3 years ago
4
Error: BP step, file not found
#13
mmpust
closed
3 years ago
2
Error thrown while running BP
#12
shreyanshumale
closed
3 years ago
7
MetaChip only identifies one gene in test dataset
#11
Cables4lyfe
closed
3 years ago
1
Error running Ranger-DTL2 in BP module
#10
Cables4lyfe
closed
3 years ago
5
Error in BP module
#9
ghost
closed
4 years ago
2
Index out of range error in MetaCHIP BP
#8
surh
closed
4 years ago
1
MetaCHIP report errors
#7
LiZhihua1982
closed
4 years ago
5
BLAST and identity distribution error
#6
susheelbhanu
closed
4 years ago
12
Missing ')' in input tree expression
#5
Thexiyang
closed
4 years ago
3
rename_cotig
#4
choumeijiao
closed
4 years ago
1
Error in rgb
#3
susheelbhanu
closed
4 years ago
3
Unknown Classification
#2
susheelbhanu
closed
4 years ago
2
Error while performing MetaCHIP PG step
#1
chenziwu5
closed
4 years ago
1
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