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sorgerlab
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bioagents
Biological reasoning agents
BSD 2-Clause "Simplified" License
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Fix source naming and escaping
#185
kkaris
opened
1 year ago
0
MSA with CoGEx
#184
dianakolusheva
closed
2 years ago
2
Extend rdflib compatibility
#183
bgyori
closed
3 years ago
0
Implement adaptive sample size for simulation
#182
bgyori
closed
3 years ago
0
TRA update
#181
dianakolusheva
closed
3 years ago
1
Use wget instead of AWS CLI in download
#180
bgyori
closed
3 years ago
0
Make MSA corpus configurable per instance
#179
bgyori
closed
3 years ago
0
Update to the new INDRA DB-REST client.
#178
pagreene
closed
3 years ago
1
Adapt to model checker changes
#177
bgyori
closed
3 years ago
0
Migrate testing to Github actions
#176
bgyori
closed
3 years ago
0
Sort update
#175
pagreene
closed
3 years ago
1
Some fixes and changes
#174
bgyori
closed
4 years ago
0
Refactor DTDA and update to newer TAS content
#173
bgyori
closed
4 years ago
0
Fix cell line extraction for goals
#172
bgyori
closed
4 years ago
0
Local statement queries with MSA
#171
bgyori
closed
4 years ago
0
Fixes for issues during demo and user tests
#170
bgyori
closed
4 years ago
0
Add cBio client, SifAssembler and multi-drug search
#169
bgyori
closed
4 years ago
0
Contextual constraints in MSA queries
#168
bgyori
closed
4 years ago
0
Ontology graph
#167
bgyori
closed
4 years ago
0
Handle corner case failures in MSA
#166
bgyori
closed
4 years ago
0
Filter for curations in StatementFinder
#165
bgyori
closed
4 years ago
0
Replace say with suggestion in MSA messages
#164
bgyori
closed
4 years ago
0
Extend synonyms in biosense and use gilda
#163
bgyori
closed
4 years ago
0
Various fixes
#162
bgyori
closed
4 years ago
0
DTDA agent filters
#161
bgyori
closed
4 years ago
0
Filter agents
#160
bgyori
closed
4 years ago
0
Family resolution responses
#159
bgyori
closed
4 years ago
0
Change display of plots
#158
dianakolusheva
closed
4 years ago
0
Handle adding duplicate component
#157
dianakolusheva
closed
4 years ago
0
Update setup.py
#156
bgyori
closed
4 years ago
0
Handle missing mutation information
#155
bgyori
closed
4 years ago
0
Refactor Bioagents interfaces to use INDRA CL-JSON
#154
bgyori
closed
5 years ago
0
networkx 2.4 compatibility
#153
kkaris
closed
5 years ago
1
Propagate source counts into HTML assembly
#152
bgyori
closed
5 years ago
0
Add suggestions to response instead of saying them
#151
bgyori
closed
5 years ago
0
Update paper search
#150
pagreene
closed
5 years ago
0
Fix the case of inactive RAF
#149
pagreene
closed
5 years ago
0
Add biosense tests
#148
pagreene
closed
5 years ago
0
Implement DTDA tasks to get all drugs, targets, or diseases
#147
pagreene
closed
5 years ago
0
Fix infinite loop in biosense EKB generation
#146
pagreene
closed
5 years ago
0
Fix silent negatives
#145
pagreene
closed
5 years ago
0
Silent negatives
#144
pagreene
closed
5 years ago
0
Modelchecker Update
#143
dianakolusheva
closed
5 years ago
0
Handle complexes in EKB conversion and make MRA input fail if not a list
#142
pagreene
closed
5 years ago
0
Msa update
#141
pagreene
closed
5 years ago
1
Extract cell line context in BioSense
#140
bgyori
closed
5 years ago
0
Stratify MSA verbs by type
#139
bgyori
closed
5 years ago
0
Expand Biosense kqml processing handled cases
#138
pagreene
closed
5 years ago
2
Handle None's in agent retrieval.
#137
pagreene
closed
5 years ago
0
Refactor all MRA outputs to use CL-JSON
#136
bgyori
closed
5 years ago
0
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