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sorgerlab / indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
http://indra.bio
BSD 2-Clause "Simplified" License
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Unify versioning of bioontology #1308

Closed cthoyt closed 3 years ago

cthoyt commented 3 years ago

This PR adds a bioontology command for getting the version in the CLI. Then it tries to update the usage in the GHA config to use it instead of hard-coding the variables

*not sure if the way I set the variable will work so we'll see in the run

bgyori commented 3 years ago

Nice!

cthoyt commented 3 years ago

This does not work since it assumes INDRA is installed. @bgyori can we safely do the installation of INDRA before downloading the bioontology?

cthoyt commented 3 years ago

@bgyori py36 passes and 39 only fails due to an unrelated pandas issue