search

sorgerlab / indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
http://indra.bio
BSD 2-Clause "Simplified" License
174 stars 66 forks source link

Update Biomappings #1340

Closed bgyori closed 2 years ago

bgyori commented 2 years ago

This PR updates mappings from https://github.com/biopragmatics/biomappings/pull/70 and propagates these into the BioOntology.

cthoyt commented 2 years ago

@bgyori looks good but maybe you want to wait just a bit for me to finalize https://github.com/biopragmatics/biomappings/pull/74 so you can pull in even more UMLS/MeSH/DOID mappings that will be helpful for https://github.com/bgyori/indra_cogex/pull/40?

cthoyt commented 2 years ago

@bgyori looks good but maybe you want to wait just a bit for me to finalize biopragmatics/biomappings#74 so you can pull in even more UMLS/MeSH/DOID mappings that will be helpful for bgyori/indra_cogex#40?

That's all taken care of and merged, so you could just update this one more time to pull in the new curations

bgyori commented 2 years ago

Due to redundant predictions in https://github.com/biopragmatics/biomappings/pull/68 there are things not working on the INDRA side, it's probably worth fixing that on the Biomappings side instead of patching it here.