Direct/indirect paths - Githubissues

sorgerlab / indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

http://indra.bio

BSD 2-Clause "Simplified" License

177 stars 68 forks source link

Direct/indirect paths #1346

Closed dianakolusheva closed 3 years ago

dianakolusheva commented 3 years ago

This PR extends the ModelChecker to optionally ignore the direct connection between source and target and search for a path with intermediate node.