sorgerlab / indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
http://indra.bio
BSD 2-Clause "Simplified" License
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Add SemRep API and processor #1380

Closed bgyori closed 2 years ago

bgyori commented 2 years ago

This PR adds an initial API and processor for the SemRep system. The implementation currently supports the processing of the XML output format of SemRep. The PR also adds a Dockerfile which can either be built to create a containerized version of SemRep or used as a template for native installation.