Eliminate isa/partof ontology cycles

sorgerlab / indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

http://indra.bio

BSD 2-Clause "Simplified" License

173 stars 65 forks source link

Eliminate isa/partof ontology cycles #1386

Closed bgyori closed 2 years ago

bgyori commented 2 years ago

This PR adds some exclusion criteria to eliminate any directed cycles in the isa/partof subgraph of the BioOntology graph which can induce cycles during Statement refinement finding.

bgyori commented 2 years ago

The test failures are due to external issues in the Biolookup and TRIPS services.