INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
This PR updates to the latest protmapper version (which uses the new UniProt API) and also makes other necessary changes: limit the cython version to < 3 which seems to be necessary to make jnius compilation work, and update a UniProt test where the content changed over time.
This PR updates to the latest protmapper version (which uses the new UniProt API) and also makes other necessary changes: limit the cython version to < 3 which seems to be necessary to make jnius compilation work, and update a UniProt test where the content changed over time.