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sorgerlab / indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
http://indra.bio
BSD 2-Clause "Simplified" License
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Pubmed retractions #1428

Closed kkaris closed 8 months ago

kkaris commented 8 months ago

This PR adds functionality to get publication tags from Pubmed XML files and to build a resource file containing retracted PMIDs.

In the assemble corpus sub-module a new function is added that filters out evidence based on the retractions in the resource file.