INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
This PR adds functionality to remove edges from the bio ontology and does that for one edge in the MeSH 2024 data. The edge removed is MESH:D015835 -[isa]-> MESH:D013285 which prevents a circular hierarchy structure since MESH:D013285 -[isa]-> MESH:D015835 is already a relation. See https://meshb.nlm.nih.gov/record/ui?ui=D015835 under the MeSH Tree Structure tab then check the branch for Nervous System Diseases [C10] where the hierarchical path MESH:D015835 -> MESH:D013285 -> MESH:D015835 is present, creating an is_a/partof cycle.
The bio ontology version is bumped to 1.32 with this PR.
This PR adds functionality to remove edges from the bio ontology and does that for one edge in the MeSH 2024 data. The edge removed is
MESH:D015835 -[isa]-> MESH:D013285
which prevents a circular hierarchy structure sinceMESH:D013285 -[isa]-> MESH:D015835
is already a relation. See https://meshb.nlm.nih.gov/record/ui?ui=D015835 under the MeSH Tree Structure tab then check the branch forNervous System Diseases [C10]
where the hierarchical pathMESH:D015835 -> MESH:D013285 -> MESH:D015835
is present, creating anis_a/partof
cycle.The bio ontology version is bumped to 1.32 with this PR.