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sorgerlab / indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
http://indra.bio
BSD 2-Clause "Simplified" License
177 stars 68 forks source link

Freeze NetworkX version #318

Closed cthoyt closed 7 years ago

cthoyt commented 7 years ago

NetworkX just released their 2.0 update - and breaks a whole bunch of old functionality. In setup.py it would be a good idea to change to networkx==1.11

bgyori commented 7 years ago

Thanks, that's a great idea!

cthoyt commented 7 years ago

You wouldn't believe the amount of head-to-wall I experienced today while coming to this conclusion in testing PyBEL