Include citations in indra.sources module documentation

sorgerlab / indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

http://indra.bio

BSD 2-Clause "Simplified" License

177 stars 68 forks source link

Include citations in indra.sources module documentation #803

Closed cthoyt closed 5 years ago

cthoyt commented 5 years ago

Something I had a problem with was trying to figure out what's the correct publication to cite for the data used in indra.sources.lincs_drug. Could you include that information in https://github.com/sorgerlab/indra/blob/master/indra/sources/lincs_drug/__init__.py?

Same for indra.sources.tas but I think I found it at:

Moret, N., et al. (2018). Cheminformatics tools for analyzing and designing optimized small molecule libraries. BioRxiv, (617), 358978. https://doi.org/10.1101/358978

bgyori commented 5 years ago

Thanks, I don't think the LINCS small molecule table has been published but the documentation links out to the table the data is coming from. I added the citation for TAS.