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sorgerlab / indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
http://indra.bio
BSD 2-Clause "Simplified" License
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Use BE families/complexes in BEL processor #96

Closed johnbachman closed 8 years ago

johnbachman commented 8 years ago

BEL statements often involve protein families defined in the BEL namespace. Need to map BEL named families to families in the bioentities namespace (where possible) and ground the statements to the appropriate bioentities ID.

Also need to get enumerated list of BEL protein families, compare against bioentities names, and unify them if possible.

Same for protein complexes.

bgyori commented 8 years ago

http://resource.belframework.org/belframework/1.0/resource/

bgyori commented 8 years ago

Done