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soribadiaby / Deep-Learning-liver-segmentation

Application of Deep Learning to the segmentation of medical images
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Problem with data.py #1

Closed faisal-zaman closed 5 years ago

faisal-zaman commented 5 years ago

There seems to be an error with data.py when creating test data

soribadiaby commented 5 years ago

Can you show me the error ?

faisal-zaman commented 5 years ago

Can you show me the error ?

This is the error I face while running on PyCharm:

Traceback (most recent call last): File "C:/Users/Faisal/Documents/Textbooks/Masters/Master Thesis/Deep-Learning-liver-segmentation-project-master/data.py", line 103, in create_test_data() File "C:/Users/Faisal/Documents/Deep-Learning-liver-segmentation-project-master/data.py", line 71, in create_test_data img=nibabel.load(os.path.join(test_data_path,image_name)) File "C:\Users\Faisal\Documents\Deep-Learning-liver-segmentation-project-master\venv\lib\site-packages\nibabel\loadsave.py", line 53, in load filename) nibabel.filebasedimages.ImageFileError: Cannot work out file type of "raw/test\test"

Process finished with exit code 1

soribadiaby commented 5 years ago

Try to delete the "test" file located in the test folder and also the "train" file in the train folder

faisal-zaman commented 5 years ago

Try to delete the "test" file located in the test folder and also the "train" file in the train folder

Thank you! It works now 😄