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sot / ska_testr

Test definitions for unit and integration testing of Ska environment packages
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Handle kadi warning from 7.11.0 agasc test #80

Closed jeanconn closed 2 months ago

jeanconn commented 3 months ago

Description

Handle kadi warning from 7.11.0 agasc test

Testing

Fixes 

ValueError: Found matches in check_files:
'warning' matched at test_unit.log:53 :: ../../../../../../../home/jconnelly/git/ska_testr/commands/tests/test_commands.py::test_get_starcat_only_agasc1p8 2024-07-23 13:21:07,533 set_star_ids: WARNING: star idx 11 not found in obsid 2576 at 2002:365:17:06:40.050
jeanconn commented 3 months ago

I suppose technically @taldcroft the test_get_starcat_only_agasc1p8 test should have kept its warning from getting out, but it seems fine to just add it to the list of expected warnings at this point.

javierggt commented 3 months ago

Why is this warning showing up? why can't it be fixed? and why is it ignorable?

taldcroft commented 3 months ago

Ugh, don't know what is going on here but it wasn't the intent to have a warning getting through. I'll have a look.

jeanconn commented 3 months ago

It looked to me like this was just a case of an expected warning not being appropriately handled by the test. So I'd recommend a kadi fix. But I'd also just like to shut up ska_testr until the next kadi release as I like to maintain awareness of real changes and errors.

taldcroft commented 3 months ago

I can't reproduce the warning. Am I doing something wrong?

(ska3) ➜  find_attitude git:(normal-sun-attitude-constraints) ska_version
2024.7-e61aad8
(ska3) ➜  find_attitude git:(normal-sun-attitude-constraints) ipython     
Python 3.11.8 | packaged by conda-forge | (main, Feb 16 2024, 20:49:36) [Clang 16.0.6 ]
Type 'copyright', 'credits' or 'license' for more information
IPython 8.22.1 -- An enhanced Interactive Python. Type '?' for help.

In [1]: import agasc

In [2]: agasc.get_agasc_filename()
Out[2]: '/Users/aldcroft/ska/data/agasc/proseco_agasc_1p8.h5'

In [3]: agasc.get_agasc_filename("agasc*")
Out[3]: '/Users/aldcroft/ska/data/agasc/agasc1p8.h5'

In [4]: import kadi

In [5]: kadi.test("-v")
===================================================== test session starts =====================================================
platform darwin -- Python 3.11.8, pytest-7.4.4, pluggy-1.4.0 -- /Users/aldcroft/miniconda3-arm/envs/ska3/bin/python3.11
rootdir: /Users/aldcroft/miniconda3-arm/envs/ska3/lib/python3.11/site-packages
plugins: timeout-2.2.0, anyio-4.3.0
collecting ... collected 182 items

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====================================================== warnings summary =======================================================
jupyter_client/connect.py:27
  /Users/aldcroft/miniconda3-arm/envs/ska3/lib/python3.11/site-packages/jupyter_client/connect.py:27: DeprecationWarning: Jupyter is migrating its paths to use standard platformdirs
  given by the platformdirs library.  To remove this warning and
  see the appropriate new directories, set the environment variable
  `JUPYTER_PLATFORM_DIRS=1` and then run `jupyter --paths`.
  The use of platformdirs will be the default in `jupyter_core` v6
    from jupyter_core.paths import jupyter_data_dir

kadi/commands/tests/test_commands.py: 14 warnings
  /Users/aldcroft/miniconda3-arm/envs/ska3/lib/python3.11/site-packages/tables/node.py:251: DeprecationWarning: `alltrue` is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use `all` instead.
    self._v_objectid = self._g_open()

kadi/tests/test_events.py::test_overlapping_intervals
  /Users/aldcroft/miniconda3-arm/envs/ska3/lib/python3.11/site-packages/django/utils/encoding.py:266: DeprecationWarning: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
    encoding = locale.getdefaultlocale()[1] or 'ascii'

kadi/tests/test_events.py::test_overlapping_intervals
  /Users/aldcroft/miniconda3-arm/envs/ska3/lib/python3.11/site-packages/django/http/request.py:1: DeprecationWarning: 'cgi' is deprecated and slated for removal in Python 3.13
    import cgi

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=================================== 181 passed, 1 xfailed, 17 warnings in 68.15s (0:01:08) ====================================
Out[5]: False

In [6]: agasc.__version__
Out[6]: '4.21.0'

In [7]: kadi.__version__
Out[7]: '7.11.0'
jeanconn commented 3 months ago

The warning is reproducible with ska_testr. It looks like ska_testr / run_testr calls pytest with the "-s" flag in our default use of it, which looks to show "output" in the ... output. 

ska3-jeanconn-fido> pytest -v -k test_get_starcat_only_agasc1p8 -s
=============================================================== test session starts ================================================================
platform linux -- Python 3.11.8, pytest-7.4.4, pluggy-1.4.0 -- /proj/sot/ska3/flight/bin/python3.11
cachedir: .pytest_cache
rootdir: /proj/sot/ska/jeanproj/git
configfile: pytest.ini
plugins: anyio-4.3.0, timeout-2.2.0
collected 182 items / 181 deselected / 1 selected                                                                                                  

kadi/commands/tests/test_commands.py::test_get_starcat_only_agasc1p8 2024-07-29 19:31:04,606 set_star_ids: WARNING: star idx 11 not found in obsid 2576 at 2002:365:17:06:40.050
PASSED

======================================================== 1 passed, 181 deselected in 16.96s
jeanconn commented 2 months ago

I think this ska_testr change might still be the easiest thing...

taldcroft commented 2 months ago

Here is a fix for kadi: