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souhridm / DiGePred

Random Forest classifier designed to predict pairs of human genes capable to causing a digenic disease when carrying rare variants simultaneously. DiGePred has been trained using digenic pairs from DIDA and non-digenic pairs from unaffected relatives of individuals with rare undiagnosed disease.
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Error with Get_DiGePred_scores_user_input_genes_or_pairs.py #2

Open gspirito opened 2 years ago

gspirito commented 2 years ago

Hi, I wanted to test the script Get_DiGePred_scores_user_input_genes_or_pairs.py on a list of gene. However i get this error:


Traceback (most recent call last):
  File "Get_DiGePred_scores_user_input_genes_or_pairs.py", line 19, in <module>
    reactome_gene_to_path_codes = pickle.load(open('~/DiGePred/data/pathways/path-to-{reactome_gene_to_path_codes}-file', 'rb'))
FileNotFoundError: [Errno 2] No such file or directory: '~/DiGePred/data/pathways/path-to-{reactome_gene_to_path_codes}-file'

Furthermore, is there a tutorial available somewhere? I want to be sure I run my analyses properly.

Thanks