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source-data / py-smtag

PyTorch version of the SourceData SmartTag engine
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Train specific model on patient as assayed species #50

Open source-data opened 5 years ago

source-data commented 5 years ago

train to predict entities where type="organism" and id="9606" and role="assayed" to find experiment with patient data.

 MATCH (a:Article)-->(f:Figure)-->(p:Panel)-->(t:Tag)
 WHERE t.type='organism' AND t.role='assayed' AND t.ext_id="9606"
 RETURN DISTINCT t.text
╒══════════════╕
│"t.text"      │
╞══════════════╡
│"patients"    │
├──────────────┤
│"patient"     │
├──────────────┤
│"Pt"          │
├──────────────┤
│"probands"    │
├──────────────┤
│"Patients"    │
├──────────────┤
│"Subject"     │
├──────────────┤
│"TN"          │
├──────────────┤
│"human"       │
├──────────────┤
│"Homo sapiens"│
├──────────────┤
│"Human"       │
├──────────────┤
│"Patient"     │
└──────────────┘