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sourmash-bio / branchwater

Searching large collections of sequencing data with genome-scale queries
https://branchwater.sourmash.bio
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How to cite mastiff? #10

Closed ay-amityadav closed 5 months ago

ay-amityadav commented 1 year ago

Dear Luiz,

Thank you for creating this tool! Can you please tell me how to cite it?

luizirber commented 1 year ago

Hi @ay-amityadav! For now I think the best one is the biorxiv preprint, doi:10.1101/2022.11.02.514947. But pinging @ctb @bluegenes to check this info =]

luizirber commented 1 year ago

For an example, "Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics" cites it like this:

We also used sourmash branchwater [69, 70] and IMNGS [71] to search the two Gloeobacterales MAGs against metagenomic and amplicon sequencing datasets in the Sequence Read Archive (SRA), respectively. For the first, we used the mastiff implementation of sourmash branchwater (github.com/sourmash-bio/2022-search-sra-with-mastiff).

ay-amityadav commented 1 year ago

Thank you very much for your quick reply!

luizirber commented 5 months ago

Marking as done!