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sourmash-bio / branchwater

Searching large collections of sequencing data with genome-scale queries
https://branchwater.sourmash.bio
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explore lat-lon-parser when normalizing metadata #5

Open luizirber opened 6 months ago

luizirber commented 6 months ago

https://pypi.org/project/lat-lon-parser/

4 fixed variable name when normalizing metadata, but we are still missing lat/lon combinations in the values because it is a freeform text field...

(thanks @rchikhi for the suggestion!)

luizirber commented 2 months ago

Also relevant: changes on country/geo_loc_name coming to Genbank and SRA: https://ncbiinsights.ncbi.nlm.nih.gov/2023/12/14/update-genbank-qualifier/