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sourmash-bio / branchwater

Searching large collections of sequencing data with genome-scale queries
https://branchwater.sourmash.bio
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operation timed out #9

Open snayfach opened 11 months ago

snayfach commented 11 months ago

$ ./mastiff sequence.fasta > matches.csv [2023-07-15T04:19:00Z INFO mastiff_client] Preparing signature [2023-07-15T04:19:00Z INFO mastiff_client] Sending request to https://mastiff.sourmash.bio Error: 0: error sending request for url (https://mastiff.sourmash.bio/search): operation timed out 1: operation timed out

Location: crates/client/src/main.rs:132

Backtrace omitted. Run with RUST_BACKTRACE=1 environment variable to display it. Run with RUST_BACKTRACE=full to include source snippets

luizirber commented 5 months ago

It's been a long time since this query was done, but I wonder if it was a transient error on the backend or if it took too long too run and the connection timed out.

I finished moving the DNS records to point mastiff.sourmash.bio to the new infra hosted by JGI, which is faster (and runs the updated index with 900k+ SRA metagenomes). If you still have sequence.fasta around, can you try again @snayfach ?