update `sourmash_args.load_query_signature(...)` to use picklists?

sourmash-bio / sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

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update `sourmash_args.load_query_signature(...)` to use picklists? #1635

Open ctb opened 3 years ago

ctb commented 3 years ago

For now, load_query_signature does an iterative search for md5 matches across all signatures. We can/should change this to use db.select(...) with picklists and/or manifests, so as to take advantage of db manifests.

ctb commented 3 years ago

note to self: this involves doing md5 substring matching in a different way than we currently do with picklists... maybe add an md5any or something?