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Quickly search, compare, and analyze genomic and metagenomic data sets.
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How to extract specific K-mers from the original fastq file by using sourmash? #1857

Open ClarenceHsiang opened 2 years ago

ClarenceHsiang commented 2 years ago

Dear sourmash team:

Good afternoon.

After the initial analysis, I get the specific K-mers list in fasta form.

For further analysis, how to extract the paried reads from the original fastq files containing specifics K-mers by sourmash?

Thank you so much

ctb commented 2 years ago

hi @ClarenceHsiang this isn't something that we have functionality to do in sourmash, I'm afraid. I'll think on whether there is other software out there that can do this.