Open ctb opened 2 years ago
actually, after watching sourmash index
I think mostly what I want is the output like that:
...loading from 'gtdb-rs207.genomic-reps.dna.k31.zip' / 22340 sigs total
which is a progress indicator rather than a progress bar ;).
could be part of https://github.com/sourmash-bio/sourmash/issues/2198 refactoring.
First, it doesn't pick up the k-mer size from the available signatures, so you have to specify it explicitly on the command line (unlike
sourmash index
, where you only need to specify -k if it's not obvious).Second, when loading from a database it doesn't make use of manifests or progress loading stuff, so it will simply say "loading signatures ... 1 of 1".
So you get
instead of any kind of useful indication of how many are being loaded - ref https://github.com/sourmash-bio/sourmash/issues/1426, https://github.com/sourmash-bio/sourmash/issues/1877