search

sourmash-bio / sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.
http://sourmash.readthedocs.io/en/latest/
Other
473 stars 80 forks source link

consider adjusting search `--threshold` default value and how `-n` works #2169

Open ctb opened 2 years ago

ctb commented 2 years ago

see https://github.com/sourmash-bio/sourmash/issues/2168 - a few ideas:

ctb commented 2 years ago

also ref https://github.com/sourmash-bio/sourmash/issues/2002

ctb commented 2 years ago

see also https://github.com/sourmash-bio/sourmash/issues/1914

ctb commented 2 years ago

Addressed this a bit, and fixed #1914, in https://github.com/sourmash-bio/sourmash/pull/2222. I think #2002 is a good long-term future for search, tho.