Open mr-eyes opened 1 year ago
neat!
A few notes -
screed
will handle gz, bz2, fasta, and fastq file formats automatically. No need to drag BioPython in!sourmash_args.SaveSignaturesToLocation
(see below) instead of sourmash.save_signatures
, as it will support many different kinds of output.sourmash_args.SaveSignaturesToLocation
with sourmash_args.SaveSignaturesToLocation(sigfile) as save_sig:
for sigs in sigslist:
set_sig_name(sigs, filename, name)
for ss in sigs:
save_sig.add(ss)