sourmash-bio / sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.
http://sourmash.readthedocs.io/en/latest/
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`csv_summary` format not created for multiple queries (`tax metagenome`) #3315

Closed bluegenes closed 4 weeks ago

bluegenes commented 2 months ago

When we originally created csv_summary output format, we didn't have a way to properly check that summarization happened independently on separate queries, so we limited this output to single-query runs.

That issue has long since been fixed, and csv_summary can smoothly output multiple query results, except that we explicitly prohibited it from doing so.

Fix in progress in #3311