Open ctb opened 1 month ago
Over in oxli-bio/oxli, @adamtaranto and I have been implementing k-mer functionality (no sketching!) on top of SeqToHashes in Rust, and then exposing it to Python via pyo3.
SeqToHashes
Most recently, we just added a kmers_and_hashes method that returns canonical k-mers and their hashes see https://github.com/oxli-bio/oxli/pull/40. We're talking there and in https://github.com/oxli-bio/oxli/issues/66 about how to pull relevant functionality back into sourmash, too.
kmers_and_hashes
We are not yet using protein k-mers, but we hope to get there soon: https://github.com/oxli-bio/oxli/issues/38
Some fun related issues popped up in this repo -
(hashval, sequence, strand, position)
Over in oxli-bio/oxli, @adamtaranto and I have been implementing k-mer functionality (no sketching!) on top of
SeqToHashes
in Rust, and then exposing it to Python via pyo3.Most recently, we just added a
kmers_and_hashes
method that returns canonical k-mers and their hashes see https://github.com/oxli-bio/oxli/pull/40. We're talking there and in https://github.com/oxli-bio/oxli/issues/66 about how to pull relevant functionality back into sourmash, too.We are not yet using protein k-mers, but we hope to get there soon: https://github.com/oxli-bio/oxli/issues/38
Some fun related issues popped up in this repo -
(hashval, sequence, strand, position)