search

sourmash-bio / sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.
http://sourmash.readthedocs.io/en/latest/
Other
476 stars 79 forks source link

Update pytest-cov requirement from <6.0,>=4 to >=4,<7.0 #3375

Closed dependabot[bot] closed 2 weeks ago

dependabot[bot] commented 2 weeks ago

Updates the requirements on pytest-cov to permit the latest version.

Changelog

Sourced from pytest-cov's changelog.

6.0.0 (2024-10-29)

  • Updated various documentation inaccuracies, especially on subprocess handling.
  • Changed fail under checks to use the precision set in the coverage configuration. Now it will perform the check just like coverage report would.
  • Added a --cov-precision cli option that can override the value set in your coverage configuration.
  • Dropped support for now EOL Python 3.8.

5.0.0 (2024-03-24)

  • Removed support for xdist rsync (now deprecated). Contributed by Matthias Reichenbach in [#623](https://github.com/pytest-dev/pytest-cov/issues/623) <https://github.com/pytest-dev/pytest-cov/pull/623>_.
  • Switched docs theme to Furo.
  • Various legacy Python cleanup and CI improvements. Contributed by Christian Clauss and Hugo van Kemenade in [#630](https://github.com/pytest-dev/pytest-cov/issues/630) <https://github.com/pytest-dev/pytest-cov/pull/630>, [#631](https://github.com/pytest-dev/pytest-cov/issues/631) <https://github.com/pytest-dev/pytest-cov/pull/631>, [#632](https://github.com/pytest-dev/pytest-cov/issues/632) <https://github.com/pytest-dev/pytest-cov/pull/632>_ and [#633](https://github.com/pytest-dev/pytest-cov/issues/633) <https://github.com/pytest-dev/pytest-cov/pull/633>_.
  • Added a pyproject.toml example in the docs. Contributed by Dawn James in [#626](https://github.com/pytest-dev/pytest-cov/issues/626) <https://github.com/pytest-dev/pytest-cov/pull/626>_.
  • Modernized project's pre-commit hooks to use ruff. Initial POC contributed by Christian Clauss in [#584](https://github.com/pytest-dev/pytest-cov/issues/584) <https://github.com/pytest-dev/pytest-cov/pull/584>_.

4.1.0 (2023-05-24)

  • Updated CI with new Pythons and dependencies.
  • Removed rsyncdir support. This makes pytest-cov compatible with xdist 3.0. Contributed by Sorin Sbarnea in [#558](https://github.com/pytest-dev/pytest-cov/issues/558) <https://github.com/pytest-dev/pytest-cov/pull/558>_.
  • Optimized summary generation to not be performed if no reporting is active (for example, when --cov-report='' is used without --cov-fail-under). Contributed by Jonathan Stewmon in [#589](https://github.com/pytest-dev/pytest-cov/issues/589) <https://github.com/pytest-dev/pytest-cov/pull/589>_.
  • Added support for JSON reporting. Contributed by Matthew Gamble in [#582](https://github.com/pytest-dev/pytest-cov/issues/582) <https://github.com/pytest-dev/pytest-cov/pull/582>_.
  • Refactored code to use f-strings. Contributed by Mark Mayo in [#572](https://github.com/pytest-dev/pytest-cov/issues/572) <https://github.com/pytest-dev/pytest-cov/pull/572>_.
  • Fixed a skip in the test suite for some old xdist. Contributed by a bunch of people in [#565](https://github.com/pytest-dev/pytest-cov/issues/565) <https://github.com/pytest-dev/pytest-cov/pull/565>_.

4.0.0 (2022-09-28)

Note that this release drops support for multiprocessing.

  • --cov-fail-under no longer causes pytest --collect-only to fail

... (truncated)

Commits
  • 9540437 Bump version: 5.0.0 → 6.0.0
  • 9f81754 Further trim down envs and drop Python 3.8.
  • b12b5ec Update conf.
  • 23f4b27 Update changelog.
  • 291a04f Bump test deps and trim config.
  • 08f1101 Add --cov-precision option. Close #655.
  • 76fe2a7 Move the warnings/errors in a place that doesn't import anything.
  • a9ea7b7 Implement error/warning for the bad dynamic_context being set in config.
  • c299e01 Add explicit suffixing to make it easier to see the identify the sources/usag...
  • c87e546 Add reproducer for weird xdist dynamic_context interaction. Ref #604.
  • Additional commits viewable in compare view


Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
codecov[bot] commented 2 weeks ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 86.46%. Comparing base (9459bd0) to head (a1d606d). Report is 1 commits behind head on latest.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## latest #3375 +/- ## ========================================== - Coverage 86.46% 86.46% -0.01% ========================================== Files 137 137 Lines 16090 16090 Branches 2219 2219 ========================================== - Hits 13913 13912 -1 - Misses 1870 1871 +1 Partials 307 307 ``` | [Flag](https://app.codecov.io/gh/sourmash-bio/sourmash/pull/3375/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sourmash-bio) | Coverage Δ | | |---|---|---| | [hypothesis-py](https://app.codecov.io/gh/sourmash-bio/sourmash/pull/3375/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sourmash-bio) | `25.43% <ø> (ø)` | | | [python](https://app.codecov.io/gh/sourmash-bio/sourmash/pull/3375/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sourmash-bio) | `92.40% <ø> (ø)` | | | [rust](https://app.codecov.io/gh/sourmash-bio/sourmash/pull/3375/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sourmash-bio) | `62.21% <ø> (-0.04%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sourmash-bio#carryforward-flags-in-the-pull-request-comment) to find out more.

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

ctb commented 2 weeks ago

@dependabot rebase