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sourmash-bio / sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.
http://sourmash.readthedocs.io/en/latest/
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Search databases for IMG genomes #385

Open ilnamkang opened 6 years ago

ilnamkang commented 6 years ago

Hello,

I came to know that sourmash search databases for IMG genomes have been prepared recently. (http://ivory.idyll.org/blog/2017-taxonomic-disagreements-in-tara-mags.html)

Are these sourmash search databases for 60,000 genomes from the JGI IMG available publicly? If so, where can I get the databases?

Thanks.

ctb commented 4 years ago

took a long time but...

IMG (as of 2017-10-01) on OSF: k=21: https://osf.io/vzuk6/ k=31: https://osf.io/7g2s5/ k=51: https://osf.io/mqsfj/

cc @luizirber