MRG: add upset, tSNE, and cluster-based category CSV creation - Githubissues

sourmash-bio / sourmash_plugin_betterplot

Improved plotting/viz and cluster examination for sourmash

BSD 3-Clause "New" or "Revised" License

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MRG: add upset, tSNE, and cluster-based category CSV creation #35

Closed ctb closed 3 months ago

ctb commented 3 months ago

This PR:

adds upset, using https://upsetplot.readthedocs.io/en/stable/
adds tsne and tsne2 from sklearn
adds clusters_to_categories to convert branchwater plugin cluster output into categories
bumps betterplot plugin version to 0.4

TODO:

[x] document upset in README
[x] add upset to examples Snakefile
[x] document tsne in README
[x] add tsne to examples Snakefile
[x] document tsne2 in README
[x] add tsne2 to examples Snakefile
[x] document clusters_to_categories in README
[x] add clusters_to_categories to examples Snakefile