deal with identical `{basename}` somehow, in `fastmultigather`

sourmash-bio / sourmash_plugin_branchwater

fast, multithreaded sourmash operations: search, compare, and gather.

GNU Affero General Public License v3.0

15 stars 2 forks source link

deal with identical `{basename}` somehow, in `fastmultigather` #24

Open ctb opened 1 year ago

ctb commented 1 year ago

deal with this warning from the docs in #21 -

Warning: At the moment, if two different queries have the same {basename}, the CSVs for one will be overwritten. The behavior here is undefined in practice, because this is multithreaded code and we don't know what queries will be executed when or files will be written first.

ctb commented 1 year ago

ref https://github.com/sourmash-bio/sourmash/issues/1614, https://github.com/sourmash-bio/sourmash/issues/2328.