sourmash-bio / sourmash_plugin_branchwater

fast, multithreaded sourmash operations: search, compare, and gather.
GNU Affero General Public License v3.0
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consolidate gather stats calculations #473

Open ctb opened 4 days ago

ctb commented 4 days ago

once https://github.com/sourmash-bio/sourmash/pull/3342 is merged, along with https://github.com/sourmash-bio/sourmash_plugin_branchwater/pull/471, I think we have a nice chance to consolidate down to one method of calculating gather stats in branchwater.

May involve sourmash refactoring per comments in https://github.com/sourmash-bio/sourmash/pull/3342 and issue https://github.com/sourmash-bio/sourmash/issues/3196.

ctb commented 4 days ago

(could result in gather speedup. 🥧 )