sourmash-bio / sourmash_plugin_branchwater

fast, multithreaded sourmash operations: search, compare, and gather.
GNU Affero General Public License v3.0
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more benchmark stuff - searching 2.3m wort isolates #6

Closed ctb closed 7 months ago

ctb commented 1 year ago
% export RAYON_NUM_THREADS=32; /usr/bin/time -v ../magsearch/bin/searcher query.list.txt sra-isolates-guess-2022-nov-03.list.txt -o matches2.csv -t 0.1 -k 31 -s 2000
...
        Command being timed: "../magsearch/bin/searcher query.list.txt sra-isolates-guess-2022-nov-03.list.txt -o matches2.csv -t 0.1 -k 31 -s 2000"
        User time (seconds): 665402.66
        System time (seconds): 4591.23
        Percent of CPU this job got: 2652%
        Elapsed (wall clock) time (h:mm:ss or m:ss): 7:00:58
        Average shared text size (kbytes): 0
        Average unshared data size (kbytes): 0
        Average stack size (kbytes): 0
        Average total size (kbytes): 0
        Maximum resident set size (kbytes): 1443436
        Average resident set size (kbytes): 0
        Major (requiring I/O) page faults: 14
        Minor (reclaiming a frame) page faults: 902693107
        Voluntary context switches: 10692901
        Involuntary context switches: 111937953
        Swaps: 0
        File system inputs: 4693214040
        File system outputs: 3896
        Socket messages sent: 0
        Socket messages received: 0
        Signals delivered: 0
        Page size (bytes): 4096
        Exit status: 101
ctb commented 7 months ago

Very out of date!