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sourmash-bio
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wort
A database for signatures of public genomic sources
https://wort.sourmash.bio
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Use pixi for dep management
#72
luizirber
opened
2 months ago
1
set executable for subprocess.run
#71
luizirber
closed
3 months ago
0
Move away from redis
#70
luizirber
opened
5 months ago
0
Move DB from postgres to sqlite
#69
luizirber
opened
5 months ago
0
Set up sentry
#68
luizirber
closed
9 months ago
1
Bump urllib3 from 1.26.16 to 1.26.18
#67
dependabot[bot]
opened
11 months ago
0
Bump gitpython from 3.1.31 to 3.1.37
#66
dependabot[bot]
opened
11 months ago
0
Bump urllib3 from 1.26.16 to 1.26.17
#65
dependabot[bot]
closed
11 months ago
1
Greyhound updates
#64
luizirber
opened
1 year ago
0
Bump gitpython from 3.1.31 to 3.1.34
#63
dependabot[bot]
closed
11 months ago
1
Support metatranscriptomes in daily download
#62
luizirber
closed
1 year ago
0
Bump gitpython from 3.1.31 to 3.1.32
#61
dependabot[bot]
closed
1 year ago
1
use biopython entrez utils for daily downloads
#60
bluegenes
closed
1 year ago
0
update download code to use entrez-direct
#59
bluegenes
closed
1 year ago
1
Bump certifi from 2023.5.7 to 2023.7.22
#58
dependabot[bot]
opened
1 year ago
0
Add fastly notice
#57
luizirber
closed
1 year ago
0
Bump flask from 2.2.2 to 2.3.2
#56
dependabot[bot]
closed
1 year ago
1
Bump redis from 4.4.0 to 4.4.4
#55
dependabot[bot]
closed
1 year ago
1
Bump redis from 4.4.0 to 4.5.3
#54
dependabot[bot]
closed
1 year ago
1
Bump werkzeug from 2.2.2 to 2.2.3
#53
dependabot[bot]
closed
1 year ago
1
Bump ipython from 8.7.0 to 8.10.0
#52
dependabot[bot]
closed
1 year ago
1
Bump setuptools from 60.1.0 to 65.5.1
#51
dependabot[bot]
closed
1 year ago
1
Update dependencies
#50
luizirber
closed
1 year ago
0
Bump wheel from 0.37.1 to 0.38.1
#49
dependabot[bot]
closed
1 year ago
1
Bump certifi from 2021.10.8 to 2022.12.7
#48
dependabot[bot]
closed
1 year ago
1
Bump mako from 1.1.6 to 1.2.2
#47
dependabot[bot]
closed
1 year ago
1
Bump numpy from 1.22.0rc3 to 1.22.0
#46
dependabot[bot]
closed
1 year ago
1
Bump httpie from 2.6.0 to 3.1.0
#45
dependabot[bot]
closed
1 year ago
1
Dependency updates
#44
luizirber
closed
2 years ago
0
Bump pygments from 2.6.1 to 2.7.4
#43
dependabot[bot]
closed
2 years ago
1
Bump jinja2 from 2.11.2 to 2.11.3
#42
dependabot[bot]
closed
2 years ago
1
[WIP] use `sracat` for downloading data from SRA
#41
luizirber
closed
1 year ago
0
running a gubaphage query
#40
rchikhi
opened
3 years ago
5
Is the website down? Everything is timing out
#39
dkoslicki
closed
3 years ago
2
Greyhound and CLI updates
#38
luizirber
closed
2 years ago
1
some signatures that have been suppressed by RefSeq/GenBank are not in wort
#37
taylorreiter
closed
2 years ago
1
Calculating SAC on metagenome clusters
#36
nmb85
opened
4 years ago
3
Create a feed for daily added datasets
#35
luizirber
opened
4 years ago
0
add computed field to datasets
#34
luizirber
closed
4 years ago
0
redirect to IPFS only
#33
luizirber
closed
4 years ago
0
Add GenBank/RefSeq historical data?
#32
luizirber
opened
4 years ago
0
Add JGI assemblies?
#31
luizirber
opened
4 years ago
0
Add support for genbank/refseq assemblies
#30
luizirber
closed
4 years ago
0
Track task results for datasets
#29
luizirber
opened
4 years ago
0
Check Stark for replacing postgres?
#28
luizirber
opened
4 years ago
0
Split compute queues by size
#27
luizirber
closed
4 years ago
0
Sharing indices
#26
luizirber
opened
4 years ago
0
Save some basic metadata about datasets in the DB
#25
luizirber
closed
4 years ago
0
Split compute queues
#24
luizirber
closed
4 years ago
0
Update dockerfiles
#23
luizirber
opened
4 years ago
0
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