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soybase / jekyll-soybase

SoyBase site, forked from jekyll-legumeinfo mid-2022; built with Jekyll and served on GitHub Pages
Apache License 2.0
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BrAPI Pedigree Viewer #120

Closed jd-campbell closed 5 months ago

jd-campbell commented 5 months ago

Request to look into BrAPI Pedigree Viewer for the SoyBase parentage data.

Current SoyBase parentage webpage is located here.

A few things to consider:

  1. What are the pedigree viewer dependencies?
  2. What is the file format required for the viewer?
  3. Can the pedigree be drawn quickly for the user or does a pedigree diagram need to be drawn and saved for users?
  4. The example BrAPI viewer has a user name and password. Is the username and passwd required?
maxglycine commented 5 months ago

It appears we will have to have a germplasm BRAPI compliant end point. That is what the pedigree viewer uses. It seems that a service could be made that utilizes a text file or a MySQL DB. If a text file is used there would be some lag reading it into a hash. We would have to distinguish not only parent child relationships but also "siblings". I don't have a sibling relationship in the database. You can identify those through the comments field. I usually put "reselection" to denote a sibling. We would probably want to change the table to include a "sibling" field. This would have to be reflexive of course. @jd-campbell @StevenCannon-USDA